Yes, I did, but after a while some switch over to the stop on the other side.
I did notice that the problem occurs when there are more buslines around. I use 2 bus lines for one route, one going clockwise and the other one going counter clockwise. When Im adding the 2nd line to the route the first one sometimes switches over while Im adding stops to the 2nd line.
In cities where I only have 2 lines or so this problem doesnt happen. Fact is, the lines on the screenshot did switch over to the opposite stop while I didnt change anything and while they were correct earlier.